SNP Profiles matching TSH 516

 Show/Hide Profiles

 Key

 1234567891011121314
_Input profile
CGATACGGACCGAACTAAAGAGACCTGT
1._TSH_516
CGATACGGACCGAACTAAAGAGACCTGT
2._TSH_516
CGATACGGACCGAACTAAAGAGACCTGT
3._TSH_516
CGATACGGACCGAACTAAAGAGACCTGT
4._TSH_516
CGATACGGACCGAACTAAAGAGACCTGT
5._TSH_516
CGATACGGACCGAACTAAAGAGACCTGT
6._TSH_516
CGATACGGACCGAACTAAAGAGACCTGT
7._TSH_516
CGATACGGACCGAACTAAAGAGACCTGT
8._TSH_516
CGATACGGACCGAACTAAAGAGACCTGT
9._TSH_516
CGATACGGACCGAACTAAAGAGACCTGT
10._TSH_516
CGATACGGACCGAACTAAAGAGACCTGT
11._TSH_516
CGATACGGACCGAACTAAAGAGACCTGT
12._TSH_516
CGATACGGACCGAACTAAAGAGACCTGT
13._GC-08-208-6-04
CGATACGGACCGAACTAAAGAGACCTGT
14._GC-08-208-6-04
CGATACGGACCGAACTAAAGAGACCTGT
15._GC-08-208-6-04
CGATACGGACCGAACTAAAGAGACCTGT
16._GC-08-208-6-04
CGATACGGACCGAACTAAAGAGACCTGT
17._GC-08-208-6-04
CGATACGGACCGAACTAAAGAGACCTGT
18._GC-08-208-6-04
CGATACGGACCGAACTAAAGAGACCTGT
19._GC-08-209-6-05
CGATACGGACCGAACTAAAGAGACCTGT
20._GC-08-209-6-05
CGATACGGACCGAACTAAAGAGACCTGT
21._GC-08-209-6-05
CGATACGGACCGAACTAAAGAGACCTGT
22._GC-08-209-6-05
CGATACGGACCGAACTAAAGAGACCTGT
23._GC-08-209-6-05
CGATACGGACCGAACTAAAGAGACCTGT
24._GC-08-209-6-05
CGATACGGACCGAACTAAAGAGACCTGT
25._GC-08-209-6-05
CGATACGGACCGAACTAAAGAGACCTGT
26._RUQ_1018
CGATACGGACCGAACTAAAGAGACCTGT
27._TSH_516
CGATACGGACCGAACTAAAGAGACCTGT
28._GC-08-208-6-04
CGATACGGACCGAACTAAAGAGACCTGT
29._RUQ_1018
__ACGGACCGAACTAA_AGACCTGT
30._EET_45_[ECU]
CGATACGTACCCAACCAAAGAGACCTGT
31._GC-03-017-2-06
CGATACGTACCCAACCAAAGAGACCTGT
32._GC-01-002-1-02
CGATACGTACCCAACCAAAGAGACCTGT
33._GC-01-002-1-02
CGATACGTACCCAACCAAAGAGACCTGT
34._GC-01-002-1-02
CGATACGTACCCAACCAAAGAGACCTGT
35._RUQ_321
CGAAAAGTACCGAGCTAAAGAGACCTGT
36._MO_9
CGATAAGGACCGAGCTATAGAGACCTGT
37._GC-05-071-2-22
CGATAAGGACCGAGCTATAGAGACCTGT
 1516171819202122232425262728
_Input profile
CGTTGTCGCTCGATCTAGCTAGATCTCT
1._TSH_516
CGTTGTCGCTCGATCTAGCTAGATCTCT
2._TSH_516
CGTTGTCGCTCGATCTAGCTAGATCTCT
3._TSH_516
CGTTGTCGCTCGATCTAGCTAGATCTCT
4._TSH_516
CGTTGTCGCTCGATCTAGCTAGATCTCT
5._TSH_516
CGTTGTCGCTCGATCTAGCTAGATCTCT
6._TSH_516
CGTTGTCGCTCGATCTAGCTAGATCTCT
7._TSH_516
CGTTGTCGCTCGATCTAGCTAGATCTCT
8._TSH_516
CGTTGTCGCTCGATCTAGCTAGATCTCT
9._TSH_516
CGTTGTCGCTCGATCTAGCTAGATCTCT
10._TSH_516
CGTTGTCGCTCGATCTAGCTAGATCTCT
11._TSH_516
CGTTGTCGCTCGATCTAGCTAGATCTCT
12._TSH_516
CGTTGTCGCTCGATCTAGCTAGATCTCT
13._GC-08-208-6-04
CGTTGTCGCTCGATCTAGCTAGATCTCT
14._GC-08-208-6-04
CGTTGTCGCTCGATCTAGCTAGATCTCT
15._GC-08-208-6-04
CGTTGTCGCTCGATCTAGCTAGATCTCT
16._GC-08-208-6-04
CGTTGTCGCTCGATCTAGCTAGATCTCT
17._GC-08-208-6-04
CGTTGTCGCTCGATCTAGCTAGATCTCT
18._GC-08-208-6-04
CGTTGTCGCTCGATCTAGCTAGATCTCT
19._GC-08-209-6-05
CGTTGTCGCTCGATCTAGCTAGATCTCT
20._GC-08-209-6-05
CGTTGTCGCTCGATCTAGCTAGATCTCT
21._GC-08-209-6-05
CGTTGTCGCTCGATCTAGCTAGATCTCT
22._GC-08-209-6-05
CGTTGTCGCTCGATCTAGCTAGATCTCT
23._GC-08-209-6-05
CGTTGTCGCTCGATCTAGCTAGATCTCT
24._GC-08-209-6-05
CGTTGTCGCTCGATCTAGCTAGATCTCT
25._GC-08-209-6-05
CGTTGTCGCTCGATCTAGCTAGATCTCT
26._RUQ_1018
CGTTGTCGCTCGATCTAGCTAGATCTCT
27._TSH_516
CG_GTCGCTCGATCTAGCTAGATCTCT
28._GC-08-208-6-04
CG_GTCGCTCGATCTAGCTAGATCTCT
29._RUQ_1018
GGTTGTCG____AGCT____
30._EET_45_[ECU]
GGTTGGCGCTCGATCTAGCTAGATCTCT
31._GC-03-017-2-06
GGTTGGCGCTCGATCTAGCTAGATCTCT
32._GC-01-002-1-02
GGTTGGCGCTCGATCTAGCTAGATCTCT
33._GC-01-002-1-02
GGTTGGCGCTCGATCTAGCTAGATCTCT
34._GC-01-002-1-02
GGTTGGCGCTCGATCTAGCTAGATCTCT
35._RUQ_321
CGTTGGCCCTCGATCTAGCTAGATCTCT
36._MO_9
CGTTGTCCCTCGATCTAGCTAG_CTCT
37._GC-05-071-2-22
CGTTGTCCCTCGATCTAGCTAG_CTCT
 2930313233343536      
_Input profile
GTCTACCTCTCGAGCTX_XX_XX_XX_XX_XX_X
1._TSH_516
GTCTACCTCTCGAGCTX_XX_XX_XX_XX_XX_X
2._TSH_516
GTCTACCTCTCGAGCTX_XX_XX_XX_XX_XX_X
3._TSH_516
GTCTACCTCTCGAGCTX_XX_XX_XX_XX_XX_X
4._TSH_516
GTCTACCTCTCGAGCTX_XX_XX_XX_XX_XX_X
5._TSH_516
GTCTACCTCTCGAGCTX_XX_XX_XX_XX_XX_X
6._TSH_516
GTCTACCTCTCGAGCTX_XX_XX_XX_XX_XX_X
7._TSH_516
GTCTACCTCTCGAGCTX_XX_XX_XX_XX_XX_X
8._TSH_516
GTCTACCTCTCGAGCTX_XX_XX_XX_XX_XX_X
9._TSH_516
GTCTACCTCTCGAGCTX_XX_XX_XX_XX_XX_X
10._TSH_516
GTCTACCTCTCGAGCTX_XX_XX_XX_XX_XX_X
11._TSH_516
GTCTACCTCTCGAGCTX_XX_XX_XX_XX_XX_X
12._TSH_516
GTCTACCTCTCGAGCTX_XX_XX_XX_XX_XX_X
13._GC-08-208-6-04
GTCTACCTCTCGAGCTX_XX_XX_XX_XX_XX_X
14._GC-08-208-6-04
GTCTACCTCTCGAGCTX_XX_XX_XX_XX_XX_X
15._GC-08-208-6-04
GTCTACCTCTCGAGCTX_XX_XX_XX_XX_XX_X
16._GC-08-208-6-04
GTCTACCTCTCGAGCTX_XX_XX_XX_XX_XX_X
17._GC-08-208-6-04
GTCTACCTCTCGAGCTX_XX_XX_XX_XX_XX_X
18._GC-08-208-6-04
GTCTACCTCTCGAGCTX_XX_XX_XX_XX_XX_X
19._GC-08-209-6-05
GTCTACCTCTCGAGCTX_XX_XX_XX_XX_XX_X
20._GC-08-209-6-05
GTCTACCTCTCGAGCTX_XX_XX_XX_XX_XX_X
21._GC-08-209-6-05
GTCTACCTCTCGAGCTX_XX_XX_XX_XX_XX_X
22._GC-08-209-6-05
GTCTACCTCTCGAGCTX_XX_XX_XX_XX_XX_X
23._GC-08-209-6-05
GTCTACCTCTCGAGCTX_XX_XX_XX_XX_XX_X
24._GC-08-209-6-05
GTCTACCTCTCGAGCTX_XX_XX_XX_XX_XX_X
25._GC-08-209-6-05
GTCTACCTCTCGAGCTX_XX_XX_XX_XX_XX_X
26._RUQ_1018
GTCTACCTCTCGAGCTX_XX_XX_XX_XX_XX_X
27._TSH_516
GTCTACCTCTCGAGCTX_XX_XX_XX_XX_XX_X
28._GC-08-208-6-04
GTCTACCTCTCGAGCTX_XX_XX_XX_XX_XX_X
29._RUQ_1018
GT___CTCGAG_X_XX_XX_XX_XX_XX_X
30._EET_45_[ECU]
GTCTACCTCTCGAGCTX_XX_XX_XX_XX_XX_X
31._GC-03-017-2-06
GTCTACCTCTCGAGCTX_XX_XX_XX_XX_XX_X
32._GC-01-002-1-02
GTCTACCTCTCGAGCTX_XX_XX_XX_XX_XX_X
33._GC-01-002-1-02
GTCTACCTCTCGAGCTX_XX_XX_XX_XX_XX_X
34._GC-01-002-1-02
GTCTACCTCTCGAGCTX_XX_XX_XX_XX_XX_X
35._RUQ_321
GTCTACCTCTCGAGCTX_XX_XX_XX_XX_XX_X
36._MO_9
GTCCACCTTTCGAACTX_XX_XX_XX_XX_XX_X
37._GC-05-071-2-22
GTCCACCTTTCGAACTX_XX_XX_XX_XX_XX_X

Input profile: TSH_516

 
 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 8604 7
 Dapeng Zhang, 2016

1._TSH_516

identical
36 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 8604 1
 Dapeng Zhang, 2016
Population Assignment: 
View Data
 Dapeng Zhang, 2016

2._TSH_516

identical
36 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 8604 2
 Dapeng Zhang, 2016

3._TSH_516

identical
36 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 8604 8
 Dapeng Zhang, 2016

4._TSH_516

identical
36 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 8604 9
 Dapeng Zhang, 2016

5._TSH_516

identical
36 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 8604 3 > FP
 Dapeng Zhang, 2016

6._TSH_516

identical
36 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 8605 1
 Dapeng Zhang, 2016

7._TSH_516

identical
36 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 8605 2
 Dapeng Zhang, 2016

8._TSH_516

identical
36 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 8605 3
 Dapeng Zhang, 2016

9._TSH_516

identical
36 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 8605 6
 Dapeng Zhang, 2016

10._TSH_516

identical
36 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 8605 7
 Dapeng Zhang, 2016

11._TSH_516

identical
36 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 8605 9
 Dapeng Zhang, 2016

12._TSH_516

identical
36 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 8605 10
 Dapeng Zhang, 2016

13._TSH_516 GC-08-208-6-04

identical
36 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

14._TSH_516 GC-08-208-6-04

identical
36 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

15._TSH_516 GC-08-208-6-04

identical
36 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3 > FP1
 Mars, 2018

16._TSH_516 GC-08-208-6-04

identical
36 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7
 Mars, 2018

17._TSH_516 GC-08-208-6-04

identical
36 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8
 Mars, 2018

18._TSH_516 GC-08-208-6-04

identical
36 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

19._TSH_516 GC-08-209-6-05

identical
36 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

20._TSH_516 GC-08-209-6-05

identical
36 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

21._TSH_516 GC-08-209-6-05

identical
36 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

22._TSH_516 GC-08-209-6-05

identical
36 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6
 Mars, 2018

23._TSH_516 GC-08-209-6-05

identical
36 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7
 Mars, 2018

24._TSH_516 GC-08-209-6-05

identical
36 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

25._TSH_516 GC-08-209-6-05

identical
36 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10
 Mars, 2018

26._TSH_516 RUQ_1018

identical
36 shared markers

 View  View all  Clone  Any
International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

27._TSH_516

identical
35 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 8604 4 > FP
 Dapeng Zhang, 2016

28._TSH_516 GC-08-208-6-04

identical
35 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4 > FP2
 Mars, 2018

29._TSH_516 RUQ_1018

97.6 %
21 shared markers

 View  View all  Clone  Any
International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

30._EET_45_[ECU]

93.1 %
36 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 3206 2 > FP
 Dapeng Zhang, 2016

31._EET_45_[ECU] GC-03-017-2-06

93.1 %
36 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2 > FP3
 Mars, 2018

32._VB_/REGINA GC-01-002-1-02

93.1 %
36 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2 > FP2
 Mars, 2018

33._VB_/REGINA GC-01-002-1-02

93.1 %
36 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5 > FP1
 Mars, 2018

34._VB_/REGINA GC-01-002-1-02

93.1 %
36 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8 > FP3
 Mars, 2018

35._ICS_70 RUQ_321

91.7 %
36 shared markers

 View  View all  Clone  Any
International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

36._MO_9

90 %
35 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 5222 2 > FP
 Dapeng Zhang, 2016
Population Assignment: 
View Data
 Dapeng Zhang, 2016

37._MO_9 GC-05-071-2-22

90 %
35 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2 > FP2
 Mars, 2018

 

  Key to SNP Markers

1TcSNP25 2TcSNP32 3TcSNP144 4TcSNP150 5TcSNP193
6TcSNP226 7TcSNP230 8TcSNP242 9TcSNP372 10TcSNP429
11TcSNP469 12TcSNP529 13TcSNP534 14TcSNP560 15TcSNP577
16TcSNP619 17TcSNP723 18TcSNP872 19TcSNP917 20TcSNP929
21TcSNP953 22TcSNP994 23TcSNP998 24TcSNP1060 25TcSNP1062
26TcSNP1075 27TcSNP1144 28TcSNP1165 29TcSNP1253 30TcSNP1270
31TcSNP1350 32TcSNP1414 33TcSNP1442 34TcSNP1458 35TcSNP1484
36TcSNP1520